Publications

Monograph

[M1] I. Shomorony and A. S. Avestimehr, "Multihop Wireless Networks: A Unified Approach to Relaying and Interference Management," Foundations and Trends in Networking, vol. 8, no. 3, pp. 149-280, Dec. 2014. doi: 10.1561/1300000044.

Journal Papers and Preprints

[J9] G. Kamath*, I. Shomorony*, F. Xia*, T. Courtade, D. Tse, HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution, Genome Research, 2017. (*equal contributions)

[J8] I. Shomorony, T. Courtade, S. Kim, and D.Tse, "Information-optimal Genome Assembly via Sparse Read-Overlap Graphs", Bioinformatics, Vol 37, No 17, 2016

[J7] I. Shomorony, T. Courtade, D. Tse, "Fundamental Limits of Genome Assembly under an Adversarial Erasure Model". IEEE Transactions on Molecular, Biological, and Multi-Scale Communications, Vol 2, No 2, Dec. 2016., 2016.

[J6] I. Shomorony and A. S. Avestimehr, "Degrees of Freedom of Two-Hop Wireless Networks: Everyone Gets the Entire Cake", IEEE Transactions on Information Theory, Vol 60, No 5, May 2014.

[J5] R. Etkin, F. Parvaresh, I. Shomorony and A. S. Avestimehr, "Computing Half-Duplex Schedules in Gaussian Relay Networks via Min-Cut Approximations", IEEE Transactions on Information Theory, Vol 60, No 11, Nov 2014.

[J4] H. Asnani, I. Shomorony, A. S. Avestimehr and T. Weissman, "Network Compression: Worst-Case Analysis", IEEE Transactions on Information Theory, Vol 61, No 7, July 2015.

[J3] I. Shomorony, R. Etkin, F. Parvaresh and A. S. Avestimehr, "Diamond Networks with Bursty Traffic: Bounds on the Minimum Energy-Per-Bit", IEEE Transactions on Information Theory, Vol 60, No 1, January 2014.

[J2] I. Shomorony and A. S. Avestimehr, "Worst-Case Additive Noise in Wireless Networks", IEEE Transactions on Information Theory, Vol 59, No 6, June 2013.

[J1] I. Shomorony and A. S. Avestimehr, "Two-Unicast Wireless Networks: Characterizing the Degrees of Freedom", IEEE Transactions on Information Theory, Vol 59, No 1, January 2013.

Conference Papers

[C14] J. Hui, I. Shomorony, K. Ramchandran and T. Courtade, "Overlap-Based Genome Assembly from Variable-Length Reads", ISIT 2016.

[C13] I. Shomorony, G. Kamath, F. Xia, T. Courtade and D. Tse, "Partial DNA Assembly: A Rate-Distortion Perspective", ISIT 2016.

[C12] A. Vahid, I. Shomorony and R. Calderbank, "Informational Bottlenecks in Two-Unicast Wireless Networks with Delayed CSIT", Allerton 2015.

[C11] I. Shomorony, T. Courtade and D. Tse, "Do Read Errors Matter for Genome Assembly?", ISIT 2015.

[C10] I. Shomorony and A. S. Avestimehr, "Sampling Large Data on Graphs", IEEE GlobalSIP, 2014.

[C9] I. Shomorony and A. S. Avestimehr, "A Generalized Cut-Set Bound for Deterministic Multi-Flow Networks and its Applications", ISIT 2014.

[C8] R. Etkin, F. Parvaresh, I. Shomorony and A. S. Avestimehr, "On Efficient Min-Cut Approximations in Half-Duplex Relay Networks", ISIT 2013.

[C7] H. Asnani, I. Shomorony, A. S. Avestimehr and T. Weissman, "Network Compression: Worst-Case Analysis", ISIT 2013.

[C6] I. Shomorony and A. S. Avestimehr, "Degrees of Freedom of Two-Hop Wireless Networks: Everybody Gets the Entire Cake", Allerton 2012. (Slides)

[C5] I. Shomorony and A. S. Avestimehr, "On the Role of Deterministic Models in K x K x K Wireless Networks", ITW 2012.

[C4] I. Shomorony, A. S. Avestimehr, H. Asnani and T. Weissman, "Worst-Case Source for Distributed Compression with Quadratic Distortion", ITW 2012.

[C3] I. Shomorony and A. S. Avestimehr, "Is Gaussian Noise the Worst-Case Additive Noise in Wireless Networks?", ISIT 2012.

[C2] I. Shomorony, R. Etkin, F. Parvaresh and A. S. Avestimehr, "Bounds on the Minimum Energy-Per-Bit for Bursty Traffic in Diamond Networks", ISIT 2012.

[C1] I. Shomorony and A. S. Avestimehr, "Sum Degrees-of-Freedom of Two-Unicast Wireless Networks", ISIT 2011. (Student Paper Award Finalist)

Selected Talks

[T1] "Designing genome assembly algorithms from a rate-distortion perspective", Allerton Conference, 09/28/2016 (Invited).

[T2] "The DNA Assembly Problem: Designing algorithms based on Information Limits", live online talk at the Shannon Channel (YouTube), 03/28/2016 (Invited).

[T3] "The DNA Assembly Problem: Designing algorithms based on Information Limits", Machine Learning Seminar, Duke University, 02/10/2016 (Invited).

[T4] "Optimal Assembly with Read-Overlap Graphs", UC Berkeley Computational Biology Retreat, 11/22/2015 (Best Presentation Award).

[T5] "Sparse String Graphs Achieve the Information Limit for de novo assembly", Cold Spring Harbor Laboratory meeting on Probabilistic Modeling in Genomics, 10/15/2015.

[T6] "Error Correction in DNA Sequencing Data: A Worst-Case Approach”, Allerton Conference, 09/30/2015 (Invited).